Suites of Bioinformatic Tools for Basic Scientists
SWAN Pathway Analysis
Publication of SWAN is available on Pubmed, Nucleic Acids Research, and as a pre-print.
Overviews of concepts and math are available on YouTube. A printable manual is linked below.
Data usage disclaimer for SWAN: data entered into this system should be limited to public data
Overviews of concepts and math are available on YouTube. A printable manual is linked below.
Data usage disclaimer for SWAN: data entered into this system should be limited to public data
swan_manual.pdf | |
File Size: | 1380 kb |
File Type: |
Start Here: SWAN Data GroomerTransform data output from vendors and core facilities into a format amenable to pathway analysis
SWAN Single Pathway AnalysisDeep-dive into interesting pathways with striking visual outputs from SWAN analysis
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SWAN Pan-Pathway AnalysisCentral pathway analysis software: Shifted Weighted Annotation Network analysis. Performs automated analysis over a large number of pathways
SWAN TCGA CNAlysis AtlasPan-pathway SWAN analysis results for TCGA cancer datasets, plus summary data for each cancer type
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Statistics and Graphical Apps
Easy to use Apps to generate standard scientific statistics and plots
Spectrum Data Plotter
Web based violin, box, dot, and average with error overlaid rich data plots.
See publication for more information. |
PCA Calculator
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Other Published Apps
CAIRN
Navigate CNAs along specific loci or gene(s), using custom or TCGA data.
See publication for more information. |
FairSubsetDetermines which consistent N subset of data retain the average and standard deviation of original data. Helps with single-datum plots and replicate normalization. See publication for more information. |